Normalized Moreau-Broto Autocorrelation Descriptor

This function calculates the normalized Moreau-Broto autocorrelation descriptor.

extractMBdesc(x, mat, nlag)

Arguments

x	A vector of k-mers
mat	A matrix with amino acid atributes. Columns are amino acids, rows are atributes
nlag	The lag parameter

Value

A matrix with the Normalized Moreau-Broto Autocorrelation Descriptor (dim: nlag * nrow(mat))

Details

Normalized Moreau-Broto Autocorrelation Descriptor is calculated based on the following amino acid attributes: CIDH920105 - Normalized average hydrophobicity scales, BHAR880101 - Average flexibility indices, CHAM820102 - Free energy of solution in water, kcal/mole, BIGC670101 - Residue volume, CHAM810101 - Polarizability parameter and DAYM780201 - Relative mutability

Note

This is an internal function used inside predict_hyp

Author